IntheregionofMainztheviceroy，BishopWilhelmvonStrassburg，restoredorderwithoutresistance。Heorderedonlyfourmenexecuted。Rheingau，wherethepeasantshadalsobeenrestless，butwhere，nevertheless，everybodyhadlongbeforegonehome，wassubsequentlyinvadedbyFrowenvonHutten，acousinofUlrich，andfinally\"pacified\"bytheexecutionoftwelveringleaders。
Frankfurt，whichalsohadwitnessedrevolutionarymovementsofaconsiderablesize，washeldincheckfirstbytheconciliatoryattitudeofthecouncil，thenbyrecruitedtroopsintheRhenishPalatinate。EightthousandpeasantshadassembledanewafterthebreachofagreementbytheElector，andhadagainburnedmonasteriesandcastles，buttheArchbishopofTriercametotheaidoftheMarshalofZabern，anddefeatedthemasearlyasMay23atPfedersheim。Aseriesofatrocities（inPfedersheimaloneeighty—twowereexecuted）andthecaptureofWeissenburgonJuly7terminatedtheinsurrectionhere。
Ofallthedivisionsoftroopsthereremainedonlytwotobevanquished，thoseofHegau—BlackForestandofAllgaeu。ArchdukeFerdinandhadtriedintrigueswithboth。InthesamewayasMargraveCasimirandotherprincestriedtoutilisetheinsurrectiontoannexthechurchterritoriesandprincipalities，soFerdinandwishedtoutiliseittostrengthenthepoweroftheHouseofAustria。HehadnegotiatedwiththeAllgaeucommander，WalterBach，andwiththeHegaucommander，HansMueller，withtheaimofinducingthepeasantstodeclaretheiradherencetoAustria，but，bothchiefsbeingvenal，theirinfluencewiththetroopswentonlysofarthattheAllgaeutroopconcludedanarmisticewiththeArchbishopandobservedneutralitytowardsAustria。
RetreatingfromtheWuerttembergregion，thepeasantsofHegaudestroyedanumberofcastles，andreceivedreinforcementsfromtheprovincesoftheMargraviateofBaden。OnMay13theymarchedtowardsFreiburg;onMay18theybombardedit，andonMay23，thecityhavingcapitulated，theyentereditwithflyingcolours。FromtheretheymovedtowardsStockachandRadolfzell，andwagedaprolongedpettywaragainstthegarrisonsofthosecities。Thelatter，togetherwiththenobilityandothersurroundingcities，appealedtotheLakepeasantsforhelpinaccordancewiththeWeingartenagreement。TheformerrebelsoftheLakeTrooprose，5，000strong，againsttheirformerallies。Sopotentwasthenarrow—mindednessofthepeasantswhowereconfinedtotheirlocalhorizon，thatonly600refusedtofightandexpressedadesiretojointheHegaupeasants，forwhichtheywereslaughtered。TheHegaupeasants，themselves，persuadedbyHansMuellerofBulgenbach，whobadsoldhimselftotheenemy，liftedtheirsiege，andHansMuellerhavingrunaway，mostofthemdispersedforthwith。TheremainingonesentrenchedthemselvesontheHilzingenSteep，where，onJuly16，theywerebeatenandannihilatedbythetroopsthathadinthemeantimebecomefreeofotherengagements。TheSwisscitiesnegotiatedanagreementwiththeHegaupeasants，which，however，didnotpreventtheothersidefromcapturingandmurderingHansMueller，hisLaufenburgbetrayalnotwithstanding。
InBreisgau，thecityofFreiburgalsodesertedthepeasantUnion（July17）andsenttroopsagainstit，butbecauseoftheweaknessofthefightingforcesoftheprinces，hereaselsewhere，anagreementwasreached（September18），whichalsoincludedSundgau。TheeightgroupsoftheBlackForestandtheKlettgaupeasants，whowerenotyetdisarmed，wereagaindriventoanuprisingbythetyrannyofCountvonSulz，andwererepulsedinOctober。